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Relevance to Autism

De novo variants in the CRMP1 gene have been reported to cause a neurodevelopmental disorder characterized by developmental delay, intellectual disability, and behavioral abnormalities; autism spectrum disorder was diagnosed in an individual with a de novo missense variant that was experimentally shown to impair CRMP1B homo-oligomerization and attenuate neurite outgrowth in mouse cortical neurons in Ravindran et al., 2022 and in an individual with a de novo frameshift variant in Liu et al., 2024. Additional de novo variants in the CRMP1 gene, including two de novo missense variants that were not reported in control databases and were predicted to be damaging by CADD, have been reported in ASD probands from the Simons Simplex Collection, the SPARK cohort, the Autism Sequencing Consortium, and a Korean ASD cohort (Satterstrom et al., 2020; Zhou et al., 2022; Kim et al., 2024). Several studies have previously reported that maternal autoantibody reactivity to CRMP1 was associated with elevated severity of ASD (Braunschweig et al., 2013; Ramirez-Celis et al., 2021; Ramirez-Celis et al., 2022).

Molecular Function

This gene encodes a member of a family of cytosolic phosphoproteins expressed exclusively in the nervous system. The encoded protein is thought to be a part of the semaphorin signal transduction pathway implicated in semaphorin-induced growth cone collapse during neural development.

External Links

        

References

Type
Title
Type of Disorder
Associated Disorders
Author, Year
Primary
Case report: A de novo variant of CRMP1 in an individual with a neurodevelopmental disorder
ASD, DD, ID
Support
Mice lacking collapsin response mediator protein 1 manifest hyperactivity, impaired learning and memory, and impaired prepulse inhibition
Schizophrenia
Support
Whole genome sequencing analysis identifies sex differences of familial pattern contributing to phenotypic diversity in autism
ASD
Support
Autism-specific maternal autoantibodies recognize critical proteins in developing brain
ASD
Support
Monoallelic CRMP1 gene variants cause neurodevelopmental disorder
DD, ID
ASD
Support
Integrating de novo and inherited variants in 42
ASD
Support
Maternal autoantibody profiles as biomarkers for ASD and ASD with co-occurring intellectual disability
ASD
Support
Risk assessment analysis for maternal autoantibody-related autism (MAR-ASD): a subtype of autism
ASD
Support
Large-Scale Exome Sequencing Study Implicates Both Developmental and Functional Changes in the Neurobiology of Autism
ASD

Rare

Variant ID
Variant Type
Allele Change
Residue Change
Inheritance Pattern
Inheritance Association
Family Type
Author, Year
 GEN1485R001 
 frameshift_variant 
 c.1755delG 
 p.Lys586ArgfsTer75 
 De novo 
  
 Simplex 
 GEN1485R002 
 missense_variant 
 c.1766C>T 
 p.Pro589Leu 
 De novo 
  
 Simplex 
 GEN1485R003 
 missense_variant 
 c.1280C>T 
 p.Thr427Met 
 De novo 
  
 Simplex 
 GEN1485R004 
 missense_variant 
 c.1052T>C 
 p.Phe351Ser 
 De novo 
  
 Simplex 
 GEN1485R005 
 splice_region_variant 
 c.883-6C>T 
 p.? 
 De novo 
  
  
 GEN1485R006 
 missense_variant 
 c.1786G>A 
 p.Val596Ile 
 De novo 
  
 Simplex 
 GEN1485R007 
 missense_variant 
 c.1571T>G 
 p.Val524Gly 
 De novo 
  
 Simplex 
 GEN1485R008 
 synonymous_variant 
 c.1242G>A 
 p.Ala414= 
 De novo 
  
  
 GEN1485R009 
 missense_variant 
 c.1966T>C 
 p.Ser656Pro 
 De novo 
  
  
 GEN1485R010 
 synonymous_variant 
 c.564G>A 
 p.Thr188= 
 De novo 
  
  

Common

No Common Variants Available
Chromosome
CNV Locus
CNV Type
# of studies
Animal Model
4
Deletion-Duplication
 26
 
4
Deletion
 9
 
4
Deletion
 3
 
4
Duplication
 1
 
4
Duplication
 2
 
4
Deletion-Duplication
 3
 
4
Duplication
 2
 
4
Deletion
 3
 
4
Deletion
 2
 
4
Duplication
 18
 
4
Deletion
 1